NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10048468

Scaffold Ga0213860_10048468


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10048468 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1812
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059026Metagenome / Metatranscriptome134N
F066809Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_100484681F066809N/ADIPFGSVKLYKQIMKFLEKEAEWGHTTATGLIMLYSNLKEQQPVTREKDWDGIIKLRGTSITIFWTMVTQMKGRGFFAAREFVEMMAAFGADLSKVVGKVHEDNQELRENHAEMAKLDQEVNHPDVILDVPIDEYNKAEEDLHKLMDEVDPVVENV
Ga0213860_100484683F059026N/AMEHIKDYKLFKESLNTEKLNEAFSSSILRDFAAQDGLKSRWRGNLAKDMQKFANLAIDKISDADFTTTTPAAYWKGPDAKDPNKVGFFVDDDPGFIKWAKANKRYLPGSLDLKNISKYGVVLSVVRGGVGMWSGFQMDRGSTYSRHRKGADDRYGVLAKDYDTRSLYNGWDGAPAPKVTRKNLIDAATRVYVLDLNSLRDKYDVSGLKSDRANSKAGATALKTAKEIKDENRKRYTAILQDKAAMTDIDKAVRDSIEMLNQHISDALKKGEMDQYGNFVIGKSPRGRDVSIKDGASAIRNMLDDYQRYKDYERQDKEARAEGREDNYYGREVKAYAKRLTDYAKKVKD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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