NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10038381

Scaffold Ga0213860_10038381


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10038381 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2028
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001521Metagenome / Metatranscriptome679Y
F008134Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_100383812F008134AGGMPQLGSDEKPVLMSSKKNKGRLYGPSWHGGKGAAPRVNVHSKQYRDNWDAIFGGNKDAEKKSDNE
Ga0213860_100383815F001521GAGGMKLWITEVVDTDQGASIGPYIKADTIAQANRIAIQYGLLVLGEIQELEHEVKLEERKLH

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