Scaffold Ga0213860_10026834

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10026834
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2409
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020815	Metagenome	222	N
F032993	Metagenome / Metatranscriptome	178	Y
F051059	Metagenome / Metatranscriptome	144	N
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_1002683410	F020815	AGGA	MRLYMNKQGEWVGTQAEAKKIGANMVEVPTDKPNLLKWLNTFTGKIDEAAEEVIENKTKPGGVTLKAHAWDTIRECAEKATINDMTVALAVYMDRVLDIADKQKETQQ
Ga0213860_100268343	F032993	GGAG	MKTNRITESLPNMEVPQLPVSLLHHMEQMGVLPTSHEDDGVDNIDIPWRSNTNYFRRDVLDEEGEPLF
Ga0213860_100268344	F051059	AGGAG	MYYALDIYSKATNKMLAYHSSDSRKDILHLKKMYAKNNFVYIKECFGETDEDKQNYRESAKYGSTTATS
Ga0213860_100268348	F087896	AGGAG	MNYKTKQGAVISDDGYTMVLKDVSLGYGWQATLWNNDRLVITHDATGETLSIPPESTQTLRDIFTAIKKETNNG