Scaffold Ga0213860_10024633

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10024633
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2512
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F005491	Metagenome / Metatranscriptome	399	Y
F011658	Metagenome / Metatranscriptome	288	Y
F021776	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_100246334	F011658	N/A	MKTLWQQLKPGIKETLNEQEEKYPSMVKAIKIALKDNYIWSHLSIGEVRDIIYFTDYTYASLSSYDWSYGEKFIVCED
Ga0213860_100246335	F021776	N/A	MTKEELEIKISTLQNLVIQKNEELSDYAAQIERLNDELKDLNKPKLTGLQLDELYQAIEQGIESFDFDDADNFDVDFHIDYDNRIAIESMSFQNADELLRVVYDEAREVFAEIKEDDNQLNQD
Ga0213860_100246337	F005491	N/A	MSAFYKDTRFNGKLVRLEDVIDEVYNRALKTIDDGLYELLNDKDDEEFYMDYKEAFGHIVEELQKFHNVEE
Ga0213860_100246338	F004523	N/A	AREAMTIFKILGIKDVTTDRQRKNGTTVYELPISQVWQTLQPKPLRFATYKAGYVRNVTEGLASPYQINKTKKRPAGTDGYHFETIERTLIPHWEDRLIYLAKFIIKNYYQKPTYVMSDYVMDCLREAYVRDYNNQPSNRLPFGDEVQVIVNGHRYNLS