Scaffold Ga0213860_10017998

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10017998
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2916
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F045677	Metagenome	152	N
F056529	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_100179983	F056529	GAG	MATKHGNRVYIQVLLEPFRGELFMQEANAQGIKPSALIRQLVYDYLAQHTEEKAYCEALVNDKQKWQDAVDARLEGRARNRRSKVTQSDQDIDSSN
Ga0213860_100179984	F006772	N/A	MERLNKAIQLATTADLQRAAMFLEGARQVRQGSRRQRTNARSAQATAWKKKVDESITW
Ga0213860_100179987	F045677	N/A	MKKVETLLPEELVERLSAEAKEKGVHRSDLIRERLMQPPNHLGLTTNDFHKAVTKVRRRSSYGLDRQQAESLVATVFNELFSPSDGD