NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213860_10008490

Scaffold Ga0213860_10008490


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10008490 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4197
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033639Metagenome / Metatranscriptome177N
F051947Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0213860_100084902F051947N/AMGIRKTGVLHDESQKFPPDGEIIFREWAVNNTVITNVCSTRIATRLPRNATLPFLTFFVSGGSMVEQGSDASIGAITIQLNCYAGRWGGGTSSQPDYATAYSLANAVAEAAHKTARTIVHTTSTATKGVIYGFDIAEMPARVEETDTGLGHYELSLIMYYRGLD
Ga0213860_100084904F033639AGGAGMSYSTSGTISEVLIGTGVLYIKDASTTNLAFPGNQSSNFENPTGMTVAWDQVGYSEDGWTLEVDKTFEDVMVAEELDPIKTLKSAQEVRLTGELAQASLTNFSFAMGGGTTAANELGAGASGAAGSSETGYHTFKPPTSDTFTEYALILHADGQAGSDRQFWMPRTVNTGSFAMAHQKAPAKVTLATEFKLLVPESTGLNVGSDSAGNYYLFVVAENRNDSDELDIN
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