Scaffold Ga0213860_10006405

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0213860_10006405

Scaffold Ga0213860_10006405

Overview

Basic Information
Taxon OID	3300021368 Open in IMG/M
Scaffold ID	Ga0213860_10006405 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4810
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F054786	Metagenome	139	Y
F077937	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_1000640511	F054786	AGGA	MQSITNQYLKSLFNSIQNELIELVKQAEKMPYTTKNNYGQYLKLLTMLKPQVGLENAVQLLLMAKGNKQGILDAKKLINN
Ga0213860_100064058	F077937	AGGAGG	MSKIKEYHLKLEEEETREERRKALFGSFFENPMASKVKHRLKRKRRD

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