Scaffold Ga0213860_10004312

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10004312
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5828
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000107	Metagenome / Metatranscriptome	2222	Y
F001156	Metagenome / Metatranscriptome	763	Y
F013137	Metagenome / Metatranscriptome	274	Y
F066127	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_100043124	F013137	AGGAG	MSNESVVNMVDALQSGDNVAAQDAFKSALTDKIGMALDAKRQTVANDWLNAGDEYEAVEAGSELTGQSFVQPQATFDDVAAEVDADDHVDFEIDDDQVVEEE
Ga0213860_100043125	F066127	GAGG	VSEISFKSFTGKLVERKTSLPTTQFNKLSPKMKAAITDMYAMINKASDPLISKIEGIVKAISKKHGVSVTDIEDYIDNELIK
Ga0213860_100043127	F000107	N/A	MAISNVTVVDTTSKYIVKSTGIGSETDQELVDANDLTGGTNESLVSLIECYYLIQGTGKLTISADTESTDLVLTGKGKYGLRPNQLKFGNDKQFKLTTDNQVKSYLLVTEFRRN
Ga0213860_100043129	F001156	AGAAG	MAQRKPKDRSREILERIVGTKSKATLAEAFKEAFAEKYNVKRDEIKQGIVDKVYNNEKVD