Scaffold Ga0213860_10001969

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10001969
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8360
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_100019694	F006666	N/A	VKPKSHKEFKKGIADEVGVHQSVVDDFLSFYYAKVRSKLSSLDFPRVYLEGLGTFYLRKNKLEKAIKKNKSILGNLAKRTYAGFAKSEDVQKDIEQMEQALHQMEQDILNKKNFKNER
Ga0213860_100019695	F004866	GAG	MALVNKVDLKLQVDLDVSIKYQIVTYCFFNETLISNSDLKFLSELGKAGKIELTKFCTDLVKQNIFKSSQSARNAITKAEKKGLLTKQGVNKKTITLNKAINVQTDGLVLLDYKVLGRETQES
Ga0213860_100019697	F005243	N/A	MAKETNVNPLSEKDPQMSKEEMAKRREEITEFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFLAQSYAQQNAQNGVDPNSEEGKAFQEAMANAMKGGSEES