NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0213860_10001581

Scaffold Ga0213860_10001581


Overview

Basic Information
Taxon OID3300021368 Open in IMG/M
Scaffold IDGa0213860_10001581 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9215
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010318Metagenome / Metatranscriptome305Y
F010532Metagenome302N
F032867Metagenome / Metatranscriptome179Y
F042853Metagenome / Metatranscriptome157N
F054777Metagenome / Metatranscriptome139N
F067760Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0213860_1000158113F067760N/AMKIRRIDMYIMNQYKNYCDEALRYKEFQKTFQAWKDDNIIELVKEYKEYRRLDRYGSQV
Ga0213860_1000158114F010532GAGGMNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDEPMNISEVDIIHRIEEHMSYMVSSYLTKSYEGISMDEQFITGA
Ga0213860_1000158116F010318AGGAGMNVDNDKPRYIECIYEAPITFDLKELGINWEDVKDYWVKHGILYVDFKNGDTESYWDNTIGETDYKWAVKESILTEDWDLVEGLN
Ga0213860_1000158118F032867GAGGMDELEKMIDDLIDNHYRVQHLIGTEADESEYLADISEDDDEV
Ga0213860_1000158119F042853AGGAGGMSKEGTYLIEIERHYIATIEVDAEREGEAIRYAYSDENQHIANRNEDYFHNFQEIEHEAKVVSFKSYEDQYPDED
Ga0213860_1000158120F054777GAGGMSNKINDETLERLYQDAVADDERGLIDDEINDIARMNNLHPDDDRDEILQFIAENEFYEQFT
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.