Scaffold Ga0213860_10001333

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10001333
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10009
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002360	Metagenome / Metatranscriptome	567	Y
F007975	Metagenome / Metatranscriptome	341	Y
F013529	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_1000133318	F002360	AGGA	VDKESNIIGENTFLKLRQQRDQARAECDQAKIQRDIALRKLNKALQIAKDLRKLVENGTETK
Ga0213860_100013332	F013529	N/A	MNKWIWKQTRKWSKWVWIKGKNNPMYSIPLVLIIAYLIWK
Ga0213860_100013333	F007975	AGGAG	MVKLVLSNEKMVTLKRGNKTITRSELDYQTNKGMYDFRGFKLEQDVVKEVKEVVTENVVPLKKKRKTRKKKDEQVDLETN