Scaffold Ga0213860_10001326

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10001326
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10040
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (14.81%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F016342	Metagenome / Metatranscriptome	248	Y
F049999	Metagenome	146	N
F062173	Metagenome / Metatranscriptome	131	Y
F071636	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_1000132614	F016342	N/A	MKSRDYHALKDEGLLKAIEEKDIIKQSSQGNFGMYDVMPVNNTRIVSEACDRFFERKNIRYGSAWFHNRIDRKKKIQQAKDERNTNS
Ga0213860_1000132615	F071636	N/A	MNETPTVKLTGHFNKTFSVRKEENGYKGLEYSFEWDFDKEQTRIPISTHGAIKLADTFRKLGFTQIHPKGYNKFI
Ga0213860_1000132618	F004688	N/A	MIEKYTMPCVHMNGSSEDSLRRQYNDLFEAVSEAQIKLLYDVDFHQRDYYPLGELVWSEANLEREEIKEAMNKVYQYARQHIHFLDYGKEPLPDED
Ga0213860_1000132619	F049999	AGG	MLGSIYTSSTMERSRCQMKIKNYLVIMEEVNRLQFEVEASSEAAAIDLVETGEAGDPNDQREMEFNCLSVKEHVK
Ga0213860_1000132624	F062173	GGA	MMNCRYDSRIIGPNGYKELMIAVLNEQDNPIDSCCHKLDSPDIYDLMSAETGAHEFGIKGWNLDPADQYQGYATKVVK