Scaffold Ga0213860_10001157

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10001157
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10697
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (14.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F017473	Metagenome	240	Y
F018534	Metagenome / Metatranscriptome	234	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025275	Metagenome	202	Y
F027835	Metagenome / Metatranscriptome	193	N
F032639	Metagenome / Metatranscriptome	179	Y
F048249	Metagenome	148	N
F084107	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_1000115712	F020115	N/A	MMNNTMTYEQFELLRQWADRVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0213860_1000115714	F084107	N/A	MITEDLNLQDLTLEISSAFNDTGAYWKLIDVLSNQNKILNRDEIEELVDRLEAFITQEVQEIIDERL
Ga0213860_1000115717	F032639	N/A	MNKKLINEDGFYAGSELMWSLEDVLRVLNEMDMTASKEDVERILIASFQDNHMLMQQINEAIGNTIVYMIEEGQLKTDEQ
Ga0213860_1000115719	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDRQKALEKKGSLLKSLMTIPYEGIVSSTDGTEDVITFTEERECEQEILKIIELKPTWPENVSIREYLVWDQMNCEAPYDGDYLPTDMAVIKDLCERQEAVADTFDVEAFHEFVRDIWYGGIAMFDADDLCVYYFQVPKPNQFTS
Ga0213860_1000115721	F017473	N/A	MTPQRKQEHIRNIAFCIKHGATGYATANFTIDDLPTPQRTGTLTQQDAYARGKAHIIFEEFLKQNPDIND
Ga0213860_1000115723	F008453	N/A	MKYAVYRVFRDWNKRPAVLMENLSKEQAQNIVRNTPSEEDSMVVFDEMR
Ga0213860_100011574	F027835	N/A	MKTQQHIDALYERRKTAGGFEQALIDAYLKADNGNTRILEDAFKGTRFDLTPKPKFNSGVETLRNAAYWSGHRHEYLNDDKTAYQIIDEYLKEND
Ga0213860_100011577	F048249	N/A	MNTSIFNTRIIRKGSKVLYRGSWGRDGQRIAEVIAIEQTQGPNEKYGDEVDAVGLDEHYVLTLNNGHWCYSYQVDGLVQPTENQSVTK
Ga0213860_100011578	F018534	N/A	MALPTLTDFLTSWDKLIVTGMTPERNDSVMTTTTNNIPVAIEYRHQISAHTGETSTVAYLVATDSNGNRVTLRNQTYGCFDDEEKQFHQWFATKMASAIELDARQRLELSRTIDDWLAE