Scaffold Ga0213860_10000136

Overview

Basic Information

• Taxon OID: 3300021368
• Scaffold ID: Ga0213860_10000136
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28767
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (86.96%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F018289	Metagenome	236	Y
F029123	Metagenome	189	Y
F048640	Metagenome	148	N
F053978	Metagenome	140	Y
F073277	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_1000013616	F018289	AGGAGG	MTEFNRSQLNLLRKQLQETIDGANLSDITIDVGNCSYTGGEATFKVKCVLKGAKTREQIDLEYYADMHGIDTTAIAKLQGEDMSIIGYKSRARKKPWILQRLRDGAEFVCSDHTAKQFFKKREEIHEDL
Ga0213860_1000013618	F004493	AGGAG	MQHKVTKNKELGFTDEQWGQLIDGNGLLIMWFIEWNNKEWHDIPDIKIQDFFAQKYNQSAGCDPWPMKGKVSLDGKYVSEYSDDDDLEPYFMIDTPDGVGYIYPYAFVALPKKGGGHTVVRMD
Ga0213860_1000013621	F053978	AGGAGG	MQINEQTKQIIREIVVELFKEVASKQTFGVSDDVLMLDEHLHDWTGRKIDKYKVNVYGATLEERY
Ga0213860_1000013622	F048640	AGGAG	MQPQELHAHARCKYEPTRVQKQLECRLFGKTFRSVAAAARYYDLSLSTVYQWHHEHKHRETFPKTARWDKWRNDNEVVNTHSTSAR
Ga0213860_1000013624	F005813	GAGG	MKLYKNSNGVWAGTQADARKYCGKDYQTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPDHEAMSWFRWAYDCMLRGQYKDAEAMLYKGLKDDRTTTSDG
Ga0213860_1000013625	F006217	GGA	MIELLLAMVEEQNPIHKYCMSKHDHWTGRAACVQELRHAQRKLEVERLRQFLKDNPHYKYPGMALPNGKIKPLDVCWGSAKTYGTNKERRC
Ga0213860_1000013626	F029123	AGGAG	MSYEVWFGQNGKWFGYHSFKYKMDAQRYEERYQTVFPNLTVEIREREHGSYS
Ga0213860_1000013631	F073277	AGGAG	MKLAVTIDVDGDIMYVPEGSVFPNFPKPKLFDNMEDAEEERAKWNTGVIVNYETGRSVEQIRSFTDAERARARVREEMNKDDGTSTGKDSTQ