Scaffold Ga0213860

Basic Information
Taxon OID	3300021368 Open in IMG/M
Scaffold ID	Ga0213860_10000061 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021368 Open in IMG/M

Scaffold ID

Ga0213860_10000061 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	41750
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (88.24%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

41750

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (88.24%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003693	Metagenome / Metatranscriptome	473	Y
F019328	Metagenome / Metatranscriptome	230	Y
F036245	Metagenome / Metatranscriptome	170	N
F039872	Metagenome	163	Y
F051944	Metagenome / Metatranscriptome	143	Y
F092017	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213860_1000006122	F051944	AGGAG	MIYQVRSTSVYGGVMTWEYNNKYDAQCKVRELKDLGGMFLVKLVEIPVAETV
Ga0213860_1000006123	F019328	AGGAGG	MPNIFDDPKSIKTWAIKLANACGGQKVEKGLLLTSLNTKRIGELLDEFVADHNENTQKIALQMQEQEENKEEE
Ga0213860_1000006129	F036245	AGGA	MSNTYKDTYESRNSGEDMADLAMQKHLEANECVEYIDYLRIGTDPKENKLDLFWYATKILLLPDYILVRKGYIYFIEVKGTNKLKAEDYYKIQEMAFKGSRFKEVKVGIMYFKSINADPVWIDHHKLYDYWTDPRIPLQYYPEKDFMGNAKAYKELPV
Ga0213860_1000006144	F039872	AGG	MSTNISGLIDRVYREYLEPMDDVNSYTTLAAGVNNSITTITFAGELLTQEEKDAMDAGTIIECDKELMRCVSLDTVNNSVVVVRGVRGTDAAEHLEGAVIKIAPPFPRQVVFDAVKDQINNLFPTLFAVETQSLTTGTGYTLIGSYDSPGTHNYIVSILSAISQYTDFSVGSDTTGVNFAPVTSSLVELPNPFTYTDADGTSRTITYSSGPSVVHAIQFAGISSGHTAHVTFKKKFIEPTAETDTLATIGLETEYEPIIMAGVAAQLMAGRDIPAATADYITDQLSVSSFPVNSANSIRNSLLQYQQLLINQARKYLRAKYP
Ga0213860_1000006145	F092017	AGGAG	MGMLLMIKEGRTLAIESIATPQEPIEPSAPIVDPNDNANDGWFGTAAFAQAAFAAELVEEGAA
Ga0213860_1000006146	F003693	AGGA	MIQSKLALIDVSADNNDSLGVEAEGMLLCGIQFPAAMTGTAITFDFSLDNSTWVDVKETDGTEVQYTVSAGDVVRVDPSGWAFASNGYLRISSNGTEAADRKIILHFRHS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213860_10000061

Overview

Ecosystem & Geography

Associated Families

Sequences