Scaffold Ga0206123_10064427

Overview

Basic Information

• Taxon OID: 3300021365
• Scaffold ID: Ga0206123_10064427
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1843
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → Phycisphaeraceae → Phycisphaera → unclassified Phycisphaera → Phycisphaera sp. TMED151 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042374	Metagenome	158	Y
F059457	Metagenome	134	Y
F091013	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206123_100644272	F091013	GAG	MTIKNEINLNSFVIHCKETKYYNVNIKARNYEEAEKRWKNIAKRRDYQTLHNEIEVISITEE
Ga0206123_100644275	F042374	GGAG	MYKTISIIFVLVSIGGCSTMPIVDSRGKSSANIKGDHNRFHDDYFTCKSLVEDQTSAGWNIGKTIYNNLRWKVLWLSPKLDTRTDFVNRCLEGRGYNVINK
Ga0206123_100644276	F059457	N/A	PTKIGNTELYTVRVLNMSVAQYYGVVKEYNEIVVATRELNKKELEKNGDKGELNLYYSVRYNLNKLVLEKLKGGK