Scaffold Ga0206123_10050290

Overview

Basic Information

• Taxon OID: 3300021365
• Scaffold ID: Ga0206123_10050290
• Source Dataset Name: Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2165
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: North Sea, Helgoland
• Coordinates
  • Lat. (^o): 54.1841
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F046317	Metagenome	151	Y
F098210	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206123_100502902	F046317	AGG	MNDKQKKEYFEYLINSYDDGTASIKGDHPKEVQVAVDSFFKAGKILVDHPEIGTIPTEYVDKLLSSLAQYPQYHKLVLDLVTILQNGEDE
Ga0206123_100502904	F012123	AGGA	MIKRNPCRINEVEYREDGCHTVERRGYAQERKTLDGVESIFVMEGGDTGIGYWYPSSEVTLVHGGWKNKPKVEPSRKSFWTRAKKV
Ga0206123_100502905	F098210	N/A	EYYDMIKPFYDQMYDKYPYNEEDPFNFEDNYKVRPRTDIEKHLDNLANLNQKSIEDIGMKKESEIGDGKSLDELIWNLGMTLPSWNNNNDKEEDNDKT