Scaffold Ga0206123_10019216

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206123_10019216

Scaffold Ga0206123_10019216

Overview

Basic Information
Taxon OID	3300021365 Open in IMG/M
Scaffold ID	Ga0206123_10019216 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4114
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083398	Metagenome	113	Y
F084854	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206123_100192162	F083398	AGGA	MIKVGDIVFPRRKGGLLNDQPLESHLGLVIKDHREKGAIPQFYVKFNQNDPKWYYQHDLHRIGGERRKNV
Ga0206123_100192166	F084854	AGG	MLYILKVVATMIVSFAAGIVLHRMLWKFFDWVLDAMERMDDEDRL

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