NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206123_10003884

Scaffold Ga0206123_10003884


Overview

Basic Information
Taxon OID3300021365 Open in IMG/M
Scaffold IDGa0206123_10003884 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12084
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047369Metagenome150N
F084212Metagenome112N
F090364Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0206123_100038845F084212GGAGMKKLMTEWRNFRKVHKVNEKIYKQYASRLSEESQEVFWNLSEDQKVFVVEDWISQGRPADHLMEEKMADLDAEQAYSTKVRGVNVIINLKDTDVQATKHSKERQYRHDEKISNRAIIQAVELAIGKIIQDYANGELGNDEPFHIRMVGKGKVPALNVIAVLDMRKGPDTIKVVTVMRKDDFKTDTFGGGEQKTYTVQTR
Ga0206123_100038847F090364GGGGGMKLIMEQWRGFLQEGRYEAATTELTRKVIPHVKYIIDEVIPSEGVQNSRKDLILVIGKKYQAGKTLPKELEDMMYMAEFTFHIDKKLAEETGDKFMIGGMHMSIPGEGKEDDYIKINSYLDIGFNEQDLNAYLGELKAVTIHEIQHGGQTDDVLGTAHPPKEPLQPPGWWNYNQIDGLRGYYASDSETDTYTKEVYKRAKYHKVPYTEALDMRIKSFFDQCKRRRDKMNAEDERETPGEYRVKYTEEELNDFFYKELRDKYIAFAKTKYPEAVGI
Ga0206123_100038849F047369GGAGVKKLLTEWRKYVLTEGMKTAAKLPQGSAIAIMSRGSNPMFVYTYGGKPLYDEPNPRFNPGVPEGAPWGEVLIGKLKPNSQGDCSDAYGVDHSEAKRGWGPLLYDVAMEWASQNGGGLTSDRGSVSQKAYRVWKHYLNSRPDVESAQLDIRNKGYEKVTPDDESDDCEQAISIQWSRYYRTSNEFGWSAEPTAYLYRVSGTPTTDALRASGQFLELGDRSP
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Institute for Fundamental Biomedical Research
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