Scaffold Ga0213859_10032863

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10032863
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2449
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004493	Metagenome	436	Y
F029594	Metagenome	188	Y
F048640	Metagenome	148	N
F053632	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100328633	F053632	GAGG	MKLYKNSEGVWAGTQADARKMCGKGYQTVDVPTDKPSLLRFLNANKVGTSYTSNDKEFEPVYAPDTDLDKKALSYFEWGYDKLRSGEFADGTEFIRKALLYQKTHNIHEEGTNA
Ga0213859_100328635	F048640	AGGA	MQPKELNAHARCRYEPTRVQKQLECRLFGKTFRSVAAAARNYELSLSTVYQWHHEHRHRETFPNTKRWNKWRAEHEVADTNLSNTG
Ga0213859_100328636	F029594	AGGAG	MLPDEMEAEKNRKVILAQADEIDILRRNVKDLQENLATCHKRIKELIDAT
Ga0213859_100328638	F004493	AGGAG	MQTSVTKNNALDFDDEQWSALIQSNGLLIMWFLEWNEKAKDNPLQIQDFFKLKYNMSAGCDPWPMKGKVSLDGKYVSEYSDDDDLEPYFMVNTPDGVGYIYPYAFVALPKKDGGHDMVRM