Scaffold Ga0213859_10009778

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10009778
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4337
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F008400	Metagenome	334	Y
F087881	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000977812	F008400	AGGA	MSKQDNNDLLPKLALGMTIFLAMKLVPKVLAWWQKKFNKKQGEIL
Ga0213859_100097783	F087881	AGGAG	MKNLIELTITFPESETQTMILEKGSEAYKQMIDYAEINEGVTSEKPHVNIIDHTMNHYLCDFRCAGIVEIHSKQSLEAEFADSNLYDVNQGADKRDWNYKGEQITFRELMEKLDRAPNTYDRWNEEARSYHGEIDHDYYMHDDGGMLIKRIW
Ga0213859_100097787	F002390	AGGAG	MTHHASKLFPIALQELLEIGEKARKQREQRERAEHVARPRGARACKHVARKEKQLKQLQLQLK