Scaffold Ga0213859_10003608

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10003608
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6851
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008453	Metagenome	333	Y
F009699	Metagenome / Metatranscriptome	314	Y
F016269	Metagenome / Metatranscriptome	248	Y
F017473	Metagenome	240	Y
F025275	Metagenome	202	Y
F025729	Metagenome / Metatranscriptome	200	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000360810	F008453	N/A	MSKYANDYAVYRIFRDHNKRPKVLMDSLTREQAQTIVQNTPSYEDSMVVFDQMR
Ga0213859_1000360811	F017473	N/A	MTTQRKEEHIRNIAFCIKTGASGYVTDNFRIDDLPTPQTAGTLSQQDAYARGKARIIFDEFIEQNPNINE
Ga0213859_1000360812	F016269	N/A	MTANDFIFICEEYSIDPVIASEDEGVRKILKTPTSDVKQQLMLSGYLHKHF
Ga0213859_1000360814	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKAMEAKQSLLARLMETEHEEIVSNTDGMQDIIIYDDLNSEQEIVKIIELKPTWPENKDVREYFVWDQMNCEAPFDGDYMPTDMAVIKDLCERQEAVADTFDVESFHEFVNDLWYGGAAMFDADDLCIYYFKMPKVHLPSQPVEFKS
Ga0213859_1000360815	F029600	N/A	MKYWNGEGQYQDLFDKHWKNLVPESGRADTAEGNAMRAIAKINYDIFNNGAGNIVNQVEEMDEDGEYYTDYSINRWWEEYFDDVEAFAGLNVDRLKTKLLGYVRFDQDGGLSDLMDDYIDHIVLRVDNQSITK
Ga0213859_1000360816	F032639	N/A	MNKKLINEDGFYAGSELMWSLEDVLRVLNEMDMTASKEDVERILIASFQDNHVLMQQINEAIGDTIVYMIEEGQLKTEEL
Ga0213859_1000360817	F009699	N/A	MMTDKEAQAFMQKVDSSAQFWQELHDEDAPTMQIQGSTVPRCLYNLMVTKRDVNLYLVGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAIHSELIGRLKEQNDEQETN
Ga0213859_1000360819	F025729	N/A	MDKTILDRLVYCEETYAGETETWRDPVTGDYYHVPIEIVRDFNNAMNLNDPN