Scaffold Ga0213859

Basic Information
Taxon OID	3300021364 Open in IMG/M
Scaffold ID	Ga0213859_10002999 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021364 Open in IMG/M

Scaffold ID

Ga0213859_10002999 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7486
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7486

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F029447	Metagenome / Metatranscriptome	188	Y
F042621	Metagenome / Metatranscriptome	158	Y
F059985	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100029993	F029447	N/A	MNIKSLALKNKLTQEKTGEFYFDLTAPSFIYDSELGVKALHYVQQDQVGRIDKISEIYFGSGEFVDALCVVNNIFNPFTVDEGDILVIPNLSRQDLVYLRPNPASRPNAAQEAYIDTGRQSEKDQARMQRLIEKAKKSKAGVNQPMPPNMLQPGQETKEYGGGKIKLGTNLNSRNTKAN
Ga0213859_100029995	F004606	N/A	MKTHRIFTKGQTVYCLLASHSRPNVLLPIKGLIVDTQWDPINPLYKIRIIKMYDNMKYLKAHFFDMNFKYEFDNRARKMPLKKEEFKNVKSLEERFDEKDRERFYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDVSSRPFFKGSLSTDSSHEFNVRFKKGWLDKFQKGGIDIDKYLNSLS
Ga0213859_100029996	F008190	N/A	METSIEFNFIYSKDAVRVKTFLGTVPRNIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQTVLDRNTTTSIFYVLGHLNEPTVEGIKTYVESLTTRDLVYNIYHSPDINVNGTAKLFENVVEFE
Ga0213859_100029997	F059985	AGTAG	MIKIVLEPARNGVIKRVIDDNHGGGKEQWTSTDVFESNDDHRNKYEYIMRFFWELCEDLGLECGNKFEKDVLRIKTEWGTHYEPNQKEIESKIKELQAEIDLLTEWKQA
Ga0213859_100029999	F042621	AGGA	MENTEQEKLQWIKGEKIGTVEIIKGTEGEWTTFESGGRISTNLISEFFEPVSGQPLDFSETPSPNANLQKATKTYKEKAVNPPITSPIRTLFDKQKKNDSVKLNLAFPIEVPKKAIYEIISTSFDLDEVNDELESFIVDQISDDFVKDSLMQSIKELISSRYKID

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213859_10002999

Overview

Ecosystem & Geography

Associated Families

Sequences