Scaffold Ga0213859_10000868

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10000868
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13688
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (46.81%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F029710	Metagenome / Metatranscriptome	187	Y
F048843	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000086819	F048843	GGAG	MSKKKDKYFVFSVPTAYIYEIQADTEKEAREILVEEGGIGIFGDLCEMTSEDYENAELEQTYEM
Ga0213859_100008682	F007770	N/A	MSGEGLSVSFRRTQETTKSNQELLEDFQNIIYRSRVMKHMKWYGQAESVQLIEHRDKELPKFQQEYVGIKDTFQFYISVRESWYQDADLYESHEVEDSFVSLARKFANDNALMYFPDGFPAEWIEQETIDGEKNWNHYNVKPDDKNIDKICDIWYRYGIMKLQAFDEKVESELWCEARDQIKQLM
Ga0213859_100008684	F029710	AGGA	MKVDSWLTIRQEDDEDVWSAPIMWLDDNSEDDLFPSDDLNIDWVEEMDKEGAPILQDDHLCRDICIEVTCPSKGWNKRRAVGYNIDMEWN