Scaffold Ga0213859_10000771

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10000771
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14562
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (87.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019474	Metagenome	229	Y
F034559	Metagenome	174	N
F040603	Metagenome / Metatranscriptome	161	N
F087134	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100007712	F034559	AGGAG	MKVIEGHFGDKDEKLPVSTVFGAISSVEDLDSYEDAFCIVKSEDYVVISTNLDTHQLYFLLDQLKLTLITRGDYEI
Ga0213859_1000077120	F087134	GAGG	MKMIEPTREEILKAWEVMYKLQHDGRRSHADVDKLHAAMRILDAEQNRRLKYDRL
Ga0213859_1000077122	F019474	AGGAGG	MTIEFESTTYKIPAFALPALVNGDYTGLIDDDEAYVDNLHEWFDSEYGVGNWHTGTISSPYFSRADLGGVLGDVCDVEVVYRMVEMEA
Ga0213859_1000077130	F040603	N/A	MYYTKHKTLADTSETTLFTVPTGYVLWINYVFIANHGGSTNNVSCWWENGAGVDQLYFLDNNSLNGGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLINEPAAFPNFNGS