Scaffold Ga0213859_10000509

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10000509
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17849
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (69.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009725	Metagenome / Metatranscriptome	314	Y
F044515	Metagenome / Metatranscriptome	154	Y
F047972	Metagenome / Metatranscriptome	149	Y
F066270	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000050914	F047972	GAGG	MRFVEFAPDQLIDRYVVVLKNLIGRASSKKVPAKFNWAGLNQILKSNDASLATDYETFKAMYDSSPAIQNLVKNFNADGVELNVPGAADDETPADGTTDAQAAVDQTAASAAPQQLAQQT
Ga0213859_1000050919	F044515	GAG	MVFGFLLSLYGLHVDAHNIVYVGVSIMSGVCAVWWFWVMFVIKDMFIRVEKAADKMVEVKEELGGIRGLIAKLFERQDDK
Ga0213859_1000050923	F066270	N/A	MKISEVLDIRYSAFDKPGKMHKIGDVYGKKNLNIPHAKYVDKTDRQKKLIKK
Ga0213859_1000050928	F009725	AGGAG	MLLWERLKNACVSAGYARAASQLATQGHYEAAKSLMLNGVKETVERKKAIRRLERVKKAKASYEPGDHYMRGHKVAFWKGHADA