NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10000481

Scaffold Ga0213859_10000481


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10000481 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18172
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (60.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017147Metagenome / Metatranscriptome242N
F018943Metagenome / Metatranscriptome232Y
F074760Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0213859_100004811F018943GAGGMKIVISGSTSPMGKAVYEHYSKTHECLGVSRSTGYDLTKTEDQDRLVSEALARDIFLNIAHVGTTQSTLLMKLKQRWSPEAPLKKVITVGSLATQVPKKLLDQVGIDKQYLKDKYHIDAVHTSLANEMPFGTQLPFSLVRVLNYGEKTGEREGEPTCSAQDII
Ga0213859_100004815F017147N/AMDKWNNFYKFKGGLAVTNMLYEPLVSNNKKIFCMNWNANKYFDNMEMTDELYNYWFNQEVKYLFKLKNKKYIPEIINIDFSKRTITFRWYDKSLHWLLETRQIDSIPNWQDKIKAIKDDLEKDNIYKINMYPHTFYFDDEDNAHIMDLYGCTDVDTKYLDVQFLKPLIRNNRFDKFIVNDQLDTHELYNETIKTNYAEWPGDFLNA
Ga0213859_100004816F074760N/AMLEKLDTKTDSKKLYQLLKHLPEGKNVLNKPTGDFFYDPWEVLPEYKDTVLDELLQQLPDHGEARLIVMKPGESYSAHADIDDRYHVTLDAEHSYLHDIENEVMFPTQADDSVYLMNTGLLHSASNYGYKNRYQLVIRKRLKNNTEIYDPRQVLMTVKNPVYNMRYLFDSSFSRILNRFVKEGKVNNFARINETTVKYLCENESITEILRMQQICGFDIDIVYG
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