Scaffold Ga0213859_10000230

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10000230
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25806
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059988	Metagenome / Metatranscriptome	133	Y
F067802	Metagenome / Metatranscriptome	125	N
F080618	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100002306	F080618	N/A	MANNWQHLNFFDKNGKYYNFDYDTSADKWTGTIYLPEVSIGLFEVGQLFILQEFVNKTTNTKEFGFPFGLEVSTGETGFTGATDGFCDWIAEWQTTDPKEIFLFQFDMDFNTGTQTALLTEEDGPKLEKVDSLTIPLSGDSSATVNPQGYLVTDEIKSEALQVNIAIRSEEENTFKRTLLIKDKCTESVIAEILVYGETVGEDERLRVMTQNMGYNILESDSSVFRDTNIKELLPNFAEVNLKRKEIMLEGSNIYPFIGSYKGLINAIKFFGYDTLQVKEFWKNVDANSPQFGKYVQSNNIALFDPTVNYNDRGFTLPNKKFRKTSLFSLVYRINNILPDRYSDEDLPLTEENYDFTIEEILIKLFGLKKKLEKEFLPLNAHIKDITGEADFFGLLEVVNTLSRNDKREIRAGISTDFKLSTDPCILLEDLRTFSSFCLASEAIVDEAVINFCNAYIAPLNPSNSIGRNLVVGPVNTGYVYPPAPIGPDLNGPFGAPYNGENVTVTALSEAFAAYFTRYAPNLSRVGAWEDGKSSYYLPDKPGIPVGALTTLENTSFTNLTWDNVDSTWDQLDSANKFFTFDIDPRAVSAGDKFIVNDPITNTGASYVAVGGDTEEDVRDQLYTQLIALKTSFTEPWLFWDISKQTVSGEDVVRIFGQNVDRLKVYAESTTGGELNFNQLPGETLFTWDAIERGNFQEIEWTVFKDETEVSPSYYRKWRGTIAEYNKLPIILPYVGDYTVEMKLIDLFNNISSNVKTDFICVESREVEYSGWYQARESDYTWSSEGRYTWKDYGSYWDLPIEPSVTWQEETPGLYTSLDRVNAILNNFGLGTSPDFQLLNYQDDGKASFSGPYRWDNLTTGGWNDTYHLWWDMTSTTGDTPAFFQFKEVVPETYLKITDINGNTAEHYFDTNTDTLAKAAASLNVSTNRIINKYVYNVVYDASNNQKFIQAVCRYFGVHGDWKYIDIVYADGTRVCPSTGVTGAPFPTGSTGCPSLIYRKGLHKASNPTWNTAKFINSGKTLPKMTWLMFVYDKCKIPGKGSPRWTIKNTTNSRVADIYFESKYLTYLFKEEGNYEITLELTDTNGNKYKKGRNILIIK
Ga0213859_100002307	F059988	AGGA	MNKFTERRKGMPSVYKATYEEGWKLKNLGNDYNENLMRNSFSSYMFRNERLSTFLDGYLKPIMTFWINKVKYLRIYYNFGVPKDYQKIN
Ga0213859_100002309	F067802	N/A	MIKEIYSRDIDAPKYNDDIIEVTDKLQQLILKIENVLFTRKGEVLGAPNVGCNLDDLVFSLVLNESVIAQKINTQIQTYCLNSSDGSFSVSTTVQFYSTVERNGALVDIFINEQRVIGAL