NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10000205

Scaffold Ga0213859_10000205


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10000205 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27673
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.81%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004370Metagenome / Metatranscriptome441Y
F051536Metagenome / Metatranscriptome144Y
F057746Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0213859_1000020511F051536N/AMLIDNTFELGIPTHISFTLFKYDYFDSIIISRVKKECKNLSKIDGEFTVKKSSFINAVKTSKRIRAQISKAEEFGFVPNPSIKPNSVYFLWSIFKRLENLEFLTFRVNDDKKYTRLVKGESGAHVLSFHFSIVEGIFDLTQLLSREELDQFNKTLINFRIMKNKYLERKPYFYMKASAIMDILASMEAEGKLNAFGILDHIDPKLEEDDPILIVKTDYTPY
Ga0213859_1000020517F004370AGAAGGMYKVRKINFGWYKRRHGILLENLPPLKQRFMIENNYLKWLDSDTQAFEVIFKVEDMNEHEKNPNRILWNPFRETFTNIKELEKDSDLIDWNCGICKVEIKSRMDSKKVENFVCKKCSEAHNSRNKRVDQRIIDSSIKFNKHCRSLLKGEQREFMTYVRRSSKR
Ga0213859_1000020522F057746N/AMAIVGSFQEDLDIYLADYKGRSGASKQSDIDLKNIGSTAKGELENGKMYSFEYFTPDETFYDTYPIVLGLGKSIDNHQLAVNLHYIPYEARIPFLSDVVRSFKSVISTQINNSPGNPDMQTRLKEFTYDNLKVSLGRKYNLTYAVRQYRIDRIKKPRMLGYDDWYIGAVNNQNHFFGGNINEAQALYYKNI
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