Scaffold Ga0213859_10000202

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10000202
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27874
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (70.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033815	Metagenome / Metatranscriptome	176	Y
F054680	Metagenome / Metatranscriptome	139	Y
F087933	Metagenome / Metatranscriptome	110	Y
F091637	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000020224	F091637	AGGAG	MSKTQQKDYHEKWLRRMGVHPQQLAQKPKARASFPNYKTDIVTAPTSDRVGNGFVKGNKRYSGDGVHIGQAYNKGNLVVLSSKEASDSATGKRR
Ga0213859_1000020233	F054680	N/A	MPMQKNKKAMNGKMQRKTDGLTPAQKKLPPALQAAILKKMKSK
Ga0213859_100002024	F087933	GGA	MTNISEKETFKVPDGYDMAGTEFQISDIKIDDHPDGSGGGILTYELYHEDEVDGSELGKVVNQVILDALTRQIEERKKED
Ga0213859_1000020247	F033815	GAG	MDWFTADLIYAMNETSWVDGIGTIIVLLVAYAAFRWIRKNI