Scaffold Ga0213859_10000129

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10000129
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33500
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (12.20%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004479	Metagenome / Metatranscriptome	436	Y
F032990	Metagenome / Metatranscriptome	178	N
F034539	Metagenome / Metatranscriptome	174	Y
F050748	Metagenome / Metatranscriptome	145	N
F064737	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_1000012910	F032990	N/A	MIAKLKLYAETLKPLLDWASANPDDKDIKYTITRIIRFSSDNPKDHGVPYMYSLAALNEVKSRGLSDPEERLKWTRWKEQKHKRGLQDSGRQNGTFHQEHIIPVSQIAKKLYDLESITVESIYDILVNNMKIAWILKTEQKTLDAVCRSGVRTPALLTSLNIHIKGFNI
Ga0213859_1000012924	F004479	N/A	MHTSKVLIGNSGDRVYLHDDKVVKEAGVYPIKFKQQMDWLANCTHPNFIKIRPLSDTSFEMDKYPTWYDKICEQPLIKSIDQLDNLIHIINDFDGYGRDVDTRSYLDKLEGRTGYKYEGNLDASSGWGFVHGDLTISNILYDKDFIFIDPRGTEEQNYYDYGKLMQSFVMKYEAHIYNERNRKYLKFCKEAENIMYEWYDEYQLKFFLAVHLLGAVPFFELNERYELAGMFLKKGHELFDELEIKYTK
Ga0213859_1000012929	F050748	N/A	MKDKALAIGVSSLEFTNILCSYYPKGIKEKFDIYLFVDDTKIDLDKLANIFEEHDLDIFKNAKIVILNDLYNHYIKKHGYEGKSKEFLLSHGCLFKILMPIYLKEKFGVKRTLVSDDDVFILNDLSYMWDEYEEFGIKKENLFYIRNKDKYDVMDAFNEIFETDFTLEQMNALSINAGNIIYGEDPKLEYYFERFMKHPFIHHLYFNFTGYTSWTVEQRFHHFNIHRYLAEGRKVKFTKSKDLRLMQNLDKGMKAGTPDERYLKQVTPSIIHYAIGTKKPLWLRDFLPGLSWKFDGFQYKPKYELKDILYNKDWQPPSFKSVQKKGFGFETKKIKSLF
Ga0213859_1000012931	F002407	N/A	METTINKIDGYELSSFVRKLLPIDKFIFMKIAKEGTVSSVYFPERDAVKLVNTPTEDIFDADIEAPVKVSFYNGTKVIDALSHFNGDVKGRIKYTEYDGEFMASDFILENDDLQINLACTDPSLSFMEMSKEETDRAFGTESKMFEFDLLTTHVDKMKSLFNLDKEEDIFTLYIGEKGINIKGTSYDATLCHTYDSNVEKGAKVVIYKKYINLLDKENYKVSVCENKVVFRSLDTNTHLTVAVAITDED
Ga0213859_1000012937	F034539	AGAAG	MLKKTLNTAKLKVKHVLGNHTTLPNYPDAEDITYELIRDYCGKVAKEIKFTNVSLQKKYSLSDEKTNSIIMQLRNDKIIDVSISNSAYTTYEVIRNPYE
Ga0213859_100001296	F064737	N/A	MKNDWYDSNPEDGFDPQDHDIEMDEIAKMYAMADMKEEQRTWAKKQAERFYSDFENLSVEEAVLAVNALISTKNVTLSEANTLLDNMIQVFQDDEEYERCHVCLQIKNGINA