NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213859_10000123

Scaffold Ga0213859_10000123


Overview

Basic Information
Taxon OID3300021364 Open in IMG/M
Scaffold IDGa0213859_10000123 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34226
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (21.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F008563Metagenome / Metatranscriptome331Y
F029449Metagenome / Metatranscriptome188N
F051960Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0213859_1000012331F051960N/AMSKEETKVVEMTTEETPMTAEQLTKKVEELEAKNETLVKEMQERTYEVDFKTKKVFDKLLKFLEKDAPWGHTTATGLIMLYHNLREQKEVVKDKEWNGIIEIRSASVTILWQMVTKMTGNGFFEAKTFVELMANIGETLSTAVQKVNDDNTELRETHMELAKVQQELDKLSVEGPTETK
Ga0213859_1000012348F029449AGAAGLAGRVPIIPGVPTPSDPQCALTYCGRIIAQVDCIKYIMQGTTACIDIQLFGADDKPLNLDNFCDIHIQLTNELECVVVNFWWPDIPSGSKGLLIDILQFTDTSGKIHNEGMLRICLTADCTKVTPGNLFAEILLTECSSGNTGDPTGVGPTGAFPTGTAEIFGIPCLWVATILESKIYKNGGDSGCGTSGSSTGSVTGS
Ga0213859_1000012349F002033N/AMNSFNKFFKDHGMKVLIVLLILSYFKSCSIDSELERIKKDQRILTTEIDTLSTQIVNEEEMIFLIKTVPAWKTLRIEEISDKERISINALEEKED
Ga0213859_100001236F008563N/AMGIAFSTIGGQKYLFPGWIPVEDHISFDDVEVINPFSKIKTQEFEVTGSTGNKYIVTKRGNNISCDCPAGKFRGMCKHIKKIQAELEVA
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