Scaffold Ga0213859_10000079

Overview

Basic Information

• Taxon OID: 3300021364
• Scaffold ID: Ga0213859_10000079
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41761
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (26.97%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007723	Metagenome / Metatranscriptome	346	Y
F010425	Metagenome / Metatranscriptome	304	Y
F011405	Metagenome / Metatranscriptome	291	Y
F018708	Metagenome / Metatranscriptome	233	Y
F032238	Metagenome	180	Y
F042385	Metagenome / Metatranscriptome	158	Y
F072235	Metagenome / Metatranscriptome	121	Y
F073532	Metagenome	120	Y
F102117	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213859_100000791	F010425	N/A	VGNYNRISPVVVVHKKPRKNGKIFIEVFEHVRVDDIISTTKRKPYVPYEHEILEIGVG
Ga0213859_1000007916	F007723	N/A	MIKAIKSKVLTYLFKDWVMNETDLETLKVSKQFIRKREIEITGHVPVLGFRSHLPQED
Ga0213859_1000007928	F072235	AGG	MTNEKITEEILYKSHSLGIRTEVWELAQKFREDDSSLDTHNSIHKAFHELTK
Ga0213859_1000007931	F073532	N/A	MRTGRYPDKCGPIEYINQTPYQIVARYPITRVLNAQAVKEWLGCDIVFKSNRLNLFIFCNEIEDAEIVKLI
Ga0213859_1000007940	F042385	N/A	MRKLTYLVTEEGEQSQKIYSLEFITDRTPTWTEQQYLRHRNNTKMELISDEETEEEKPVSREIDLG
Ga0213859_1000007946	F102117	N/A	MTNSWYYREMGSRDKKGNLKYYQVRVTDYVIDDCECPARGFRRYTPCKHMKRLHEKLPHLAI
Ga0213859_1000007947	F011405	N/A	MNVLIKPKVTKPWSKEMYDYNDKVADLMKENIIKSIVKYQNDFDKLNELMVLCGGIKYGGGYSIDDLYQDVHHEVETVQNYWLNEEYPYAVKQGLVEPVLYDFVGYDK
Ga0213859_1000007972	F032238	N/A	MGKLIYMESTINMMGKKNGKKTKQLIDSGEIVNTEEVNYLVKEDKRVEVRKTLDGRPLVELDEPMALVVNTKVPHKWILQDTETGEIYRGTTEHTIGKQWEKIIEIND
Ga0213859_1000007987	F018708	N/A	MTKHKYTNRTAVFVTPEQLKFLKQMDNWLSNEPWQSEVELKTAMEVRELITQVETKGHYYEDEADLLNLMRSEYIEHTKKNKKK