Scaffold Ga0193699_10010392

Overview

Basic Information

• Taxon OID: 3300021363
• Scaffold ID: Ga0193699_10010392
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3334
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9134
  • Long. (^o): -106.8956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018133	Metagenome / Metatranscriptome	236	N
F027566	Metagenome / Metatranscriptome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193699_100103923	F018133	GAGG	MGCNFDGGLTWLALGKARAGSELDSFRVEIPDVDLERVDATISPSNMDMFMPYGQGPVVGPINVSRISIGPRTVDGVANGNVVTVHFNILSSYSTRTDFLQPDAISYILVLNNKSTGCRR
Ga0193699_100103926	F027566	GGAG	MKTLAMKYLGAFGLAAVLAMTAVSSSYARPHDSSCIPQYDTSGAQIAPYC