Scaffold Ga0193699_10004090

Overview

Basic Information

• Taxon OID: 3300021363
• Scaffold ID: Ga0193699_10004090
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5318
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9134
  • Long. (^o): -106.8956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049720	Metagenome / Metatranscriptome	146	N
F097682	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193699_100040904	F049720	AGG	MSTGDYEKGVSAAMTITNASSSFTGSKSGRTLKFTPQAIEKIKELVAQGVSREEIAKLLDVTVGSLQVTCSRLGISLRRLGIHKAPTRTALDSNGRTVPPFRWLAGTQLQAVEKGQQSSARFVITVRRKGVEGAVDLPLSQQAIERLGIEAAFRDMGLVELMAQVVGGAVKKDVVEQILNEEAPLRY
Ga0193699_100040907	F097682	GGAG	MPTCLSFLCDAMNPQQVCFDLQHGATTMIGPTMSQTENVRDSPKRRATKFAPENVQKIKDCVAQGVGREEIAKLLDVTVGSLQVTCSRLGISLRRPHMRYPSCDRLKTQLQLRMVEKGSRPQGKFAITTHRKDNVRAVDVPLSVEAIGQLGLYASLRDMGLVELIAQVLGEAVKKDLVGKILDDIPPKP