Scaffold Ga0213872_10021405

Overview

Basic Information

• Taxon OID: 3300021361
• Scaffold ID: Ga0213872_10021405
• Source Dataset Name: Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2977
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.2822
  • Long. (^o): -43.5936

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019703	Metagenome / Metatranscriptome	228	Y
F038775	Metagenome / Metatranscriptome	165	Y
F039233	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213872_100214053	F019703	N/A	MRTAMNRTDSGPDELALIRTEPISMRWANELRRNVRLHPSCRLLRELLGLDPCTRTVVYPFLMKGWSSIQIAERLKVSLATIQTLLEIGRDQLKRKLATFR
Ga0213872_100214054	F038775	N/A	MTRLRIAEDPGEEFVLRAHNVLTNADEDAIVFYNDVTKVQVVPESRSFTIQVLTPSLVVEMDYADANAVRNALALFEAKKVLAVDFEVPNSVRLLPTNFETAGT
Ga0213872_100214055	F039233	GAGG	MTTEEVLKAFGRYTKESNESDRRTAAIVGIKLATLKAWVQGAEPPQKYVLARLAGFLRRVGYL