Scaffold Ga0213872_10000331

Overview

Basic Information

• Taxon OID: 3300021361
• Scaffold ID: Ga0213872_10000331
• Source Dataset Name: Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40030
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (58.70%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.2822
  • Long. (^o): -43.5936

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003842	Metagenome / Metatranscriptome	466	Y
F006234	Metagenome / Metatranscriptome	378	Y
F021846	Metagenome / Metatranscriptome	217	Y
F024737	Metagenome	204	Y
F042459	Metagenome	158	Y
F090720	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213872_1000033119	F003842	GGA	MVTVKETRQTVPEFAKWSFSADGKPLAIDDFLETYRKQGVFYEGKEQWLKGVSKVTWENFFLICTEELDDISQRAAKMLVVYCLEIAEDIVSRMRGPVSAAKIADAMKREFDEQYENRVYQFQWAMRHEAVRDAVTNAVMNRWGK
Ga0213872_1000033129	F090720	GGAG	MKIESVISATFLWCFSITAGRAATVVHDPIHTVLNVAQQVYGQVRQEAQHAEDVTKYTTMIQKQLQQINQLTSIINQNVEQLRRFGSPDTYINMLGLDDLFAEVNKARAGVGKTVADFTEAANGIAALKYTGGGLYQDLSELPDKFGRNVRYQTESFKKFGVIQDMYEEYNNQLSAVNQSFARLEDQVHNTAHQVDTAASLVETEKLNTKLQAVQGALDTNVQRATLAALKVLVQAEANRNDQARAQEVLRQRRVQEMTMENQELRELGGNLLGPPGGS
Ga0213872_1000033130	F006234	GAG	MKWSGITACILLASCTVGPSVPKGQLTLQGRGSEALTNDGDPLVNTGIDARKVPIEFAKGYTKGVSDEVKRTYWARQEAQKTTDENLEGHVRYYNATIPERQDSNGVIRVQREVIIPIVE
Ga0213872_1000033132	F024737	N/A	MNETLIYTDSRPRAKSTGHAFGFEGNLGIPVIISGMLSVLVLTLLLNGENGMPLLAKFLLALAPTVLTTAYIVLLRSRRPPRFDLDLFASWVNGQSFQPARIQPRHPFVPNRDQ
Ga0213872_1000033133	F042459	N/A	MNERFRSDRFCAAGWRRGFVAALLVWLCADVAFADGALDSFTGPLKSGLNLIMIFGFIAGCVMVMSGFLNAKRDENWKMTVIYGLGVAGAVALMKALFAMFGGAAGSAVTGF
Ga0213872_1000033135	F021846	GGA	MAKDQIMLKFFSSPLDPDEFVTKLKGIVDEEEIDPGNATQFSGQRPVIGRFDSHRFKLQRRVGIHWILWWLTPGQWFKPYINGIVTSRNSGSRIELDGGTPISVKAIWVLVLLGLTGLIATWTAFSYPYNLSHDPAHAAGHMLAGIILLKLAAVILVLLPAIGWLLTRYHLAEMVRELQRHLDLQQIE