Scaffold Ga0213873_10000005

Overview

Basic Information

• Taxon OID: 3300021358
• Scaffold ID: Ga0213873_10000005
• Source Dataset Name: Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 416778
• Total Scaffold Genes: 369
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 209 (56.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil

Source Dataset Sampling Location

• Location Name: Brazil: Minas Gerais
• Coordinates
  • Lat. (^o): -19.2822
  • Long. (^o): -43.5936

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006775	Metagenome	365	Y
F067094	Metagenome	126	Y
F089128	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213873_10000005146	F089128	GGA	LTLFLNLLLGLVPTLILGASIAAGVDDDAHHRRVFLLVYALWAFTLAGWNWHESASAAWIVVWIAFGLIALVWRALRVRVNGS
Ga0213873_1000000558	F067094	N/A	MHNVMSYTDWLRRQVERLEDEIRRHSVFDSDRPASMVQLRELRSKVVIHTYLRQQLLRRETPVVLDEEYDTQEFVVVRRAQ
Ga0213873_1000000591	F006775	GGAGG	MQLGKDSCACGHPIDGHDGGRGGPCNVCACAAGEPPTAFQVGLIHALHEVTVTLVRLVKEVQAARGGGAPQ