Scaffold Ga0213858_10295297

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10295297
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 774
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F020115	Metagenome / Metatranscriptome	226	Y
F025729	Metagenome / Metatranscriptome	200	Y
F084107	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_102952971	F025729	N/A	AIIDRLEYVEETYAGETETWQDPVTGDYYHVPIEIVRDFDNAMNLNDPN
Ga0213858_102952972	F020115	N/A	MNNTMTYEQFEILRQWAERVANTANDTDKHIRSIDLVHDIAGILANDEHFLPRL
Ga0213858_102952973	F084107	N/A	MNEDLTLQISNAFNDTGAYKELNRLLFVSNTLGRQEIEELIDRLEAFIVQEIDELIDER
Ga0213858_102952974	F009699	N/A	MMTDKEAQAFMQKVDSSAPFWQELHSEDRPTIKIQGRDVPRCLYNLMVTRRDVNLYLHGLKPHRGWKIGDVKAYFGLKGGKQKVADAINAMHSE