Scaffold Ga0213858_10069815

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10069815
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1710
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007119	Metagenome / Metatranscriptome	357	Y
F018647	Metagenome / Metatranscriptome	234	Y
F027814	Metagenome	193	N
F031527	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_100698152	F018647	AGG	MHKKPLFLVTFLTFLFLFCSGCVKKLENCKIFPKIELESGEKTESNDKKMNTEDKIKNIIENRTTSAQASCNF
Ga0213858_100698153	F031527	AGGAG	MKKKILEYMTIVFAVMGTIAMFAAVGAIETDQYLLGASAVCVGIASYIMSLFSQQLYSEA
Ga0213858_100698155	F027814	GGAGG	MSKEQLKFNDLPRIMDWIKDPSNAGHLFIIEQTLKSVKADQFKVGTKVTFGRANGQKRMGIIEKFGRVKAVVNCNGAKWRVPFDLMTVVDE
Ga0213858_100698156	F007119	AGTAG	MSKFQVIKDNKLLKEFDKPMDAAIFALNNEYGPGMSIVTDDKDASETWIHFEYKEKL