Scaffold Ga0213858_10065216

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10065216
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1771
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030088	Metagenome	186	Y
F033798	Metagenome	176	Y
F047679	Metagenome	149	N
F049552	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_100652162	F033798	N/A	MKHYYELRDPNRFAEVLDRMMHDEPMKWQGWMMDMETNQLSLEAFRKWLSAEWYEKQLMKDDFPEFEFLDDDMLVLDMQHELLASLN
Ga0213858_100652163	F030088	N/A	MRLNIVTKTKMSAKEMSRTLITLDRSEVFDYYGKLFVPFSAMSVVFNSKGATKRFDKDLDVLVHPTRGRLFQVPKEVEQFITVV
Ga0213858_100652164	F049552	N/A	MKDKNKEFWNVIAAMDFNGRGHEFAGRWLMEDSGLTFSEIKQIRNTATRKVNVLYDKFINDPNLKIGSDDGFDDVLWQTVANGFQSFHSCTAESLTEMYDENRYTESFAYAFHVVSEAEDEQFRANQFLKRERAMKRIEEMRKYGGGFDQKLIAAFEHADNNNKRKLAKGFPEIFEHLVD
Ga0213858_100652165	F047679	GGA	MKIIETDIAPIVADQEGDHYFFVGETVYYLNEFMKTLGNRDFDGVAHITNQGGIGVKVDEANEEVEYTIFTASY