Scaffold Ga0213858_10044252

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10044252
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2150
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022392	Metagenome / Metatranscriptome	214	N
F071138	Metagenome / Metatranscriptome	122	N
F103098	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_100442522	F071138	GAGG	MFKVTVSDVESFGRDYYTTTSVAFGKSPKQAWAKLRRRGEHTVSGGHPEGYGGTPVLQCRRLEKDGKIISEIWD
Ga0213858_100442524	F103098	GGAG	MLNAKNVDRVEDCGNGFGWSIIHFDDEFYGNCYEFAVLRDGALCYDSGVTSDVVRGDWTMMDKLKCMVQDIHPDRLAS
Ga0213858_100442525	F022392	AGGA	MKSFNITIIDPWTNREVRHLDVPQSQLKDIDGETWYTGYNKPIEVITATAISEESQTAKAAYFAKWGTASE