Scaffold Ga0213858_10043828

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10043828
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2160
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Alteromonas/Salinimonas group → Alteromonas → Alteromonas australica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037202	Metagenome / Metatranscriptome	168	N
F056567	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_100438283	F056567	AGGAGG	MKRYFAKPDTWFKEGTEAFYEEEMFPVGTLFDEDGISHGSAIYRGTYVIGPNEGCDTYWHSKGYKEGDEVEIREHCCNSEFIVVEENEE
Ga0213858_100438284	F037202	GGAG	MNNIEDIKNKWENTRLLEELPEDEQYSMSQLLENEARHILSTYQDVNESQLANICFPLIRRVFQSPGFFEEGDCPLTFTYETSVLPAFTYFKPDEEESSVATTQVYDFESSPNKEVVDKICSNSYYALDAEVGLTAELAERFRNELNEKHKGKHLIFGYPIMMREEDGELIYSYRCAVLPGGSRLHEGGYKE