Basic Information | |
---|---|
Taxon OID | 3300021356 Open in IMG/M |
Scaffold ID | Ga0213858_10025708 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2825 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Neritesvirus → Neritesvirus scam8 | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F028966 | Metagenome | 190 | N |
F044811 | Metagenome | 154 | N |
F091572 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0213858_100257082 | F028966 | AGGTGG | MSAYAFVNYVRFKTQADAYTGTPYQNFSINEQRVYDGITYSFAPFAVSSGGGARGGDRSSASLVAGTDALSVNLFAEAVQNRYMLEIKTVSLDPLTFADEALVASEIWRVASYGMDTTRVVLKLTSPLDAVKAQVPRRTLSTTLVGALPTSGALVVS |
Ga0213858_100257083 | F044811 | GGTGG | MWRDWIGLPHQFRADPRNGHGADCLIMVWNVLEDAAVPHPPFDPIWLDLAENGRHRLLARAYEELTIPLDAPEEYAVTLFSTERTIGIGVVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFK |
Ga0213858_100257084 | F091572 | AGGA | MMLPSDRYLADILGLTEEQYRHFQIEVRKRAAEGPQPAVVAGVEIYLAVASLLLSVGSLAISALLKPTIPQPGQAGQPRQAQDITDPIIRNSRFAPRYGFDSQQDIATLGSIIPIVYANRELISGDYYGGIRINMPMLWNQILSLGGGQMLRGVFLLGEGTVSSIDTTGFAIGSNTLQGYVFDNTSATEQGSRVTVYFSPDGGRIAGTDRVLGRTNANDDGSSSSSDVFQVYWDGDEQQDFCSSNRPSTQTTFGVYAPIGNDLMYKVNPLLRPGVRSQLKPQSGGDVRVRCPADSQQMNQRDKIRAPFTTFSGLNNESITADSETRTASVGDILTYKIFSESHKSVVFNNYDEPGFDNDDATAKDVASTVSSLQKSW |
⦗Top⦘ |