Scaffold Ga0213858_10015546

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10015546
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3607
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014373	Metagenome / Metatranscriptome	263	N
F016661	Metagenome	245	Y
F065668	Metagenome	127	N
F097118	Metagenome	104	N
F105152	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1001554612	F105152	GGAG	MSREYCRVDDCPSYDYSDYEDSTGYYTPHDDREVDYDPIEQPEMYKRLKEVKTRLGVKQD
Ga0213858_1001554614	F014373	AGGAG	MSRCKACDVILTEAELRKRDRVTDEFIDLCSDCHTASDEAIEENWSIAEERDIIRSNN
Ga0213858_100155464	F097118	AGG	MIKFPSGLKFGKGEDSLVDSLFAGDSTNDGWYTVTGRKYKTMRFFTGNGKPLFYIVSNKHGITSGSLTTSGEKFYYMAGTCSLTSKKLGLDKLDYTTEKTLITDIIEVA
Ga0213858_100155466	F016661	GAGG	MNYSAERYLALKQFEREQKRDKIRAVLFNLTIGGYVVLLAVQVIRGL
Ga0213858_100155468	F065668	AGGAG	MLYTVWVGGVEVNSHLTNREEAHRIASNWRNDGYSDVIVERYKPYEYHS