Scaffold Ga0213858_10004919

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10004919
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6273
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020356	Metagenome / Metatranscriptome	224	N
F060355	Metagenome / Metatranscriptome	133	Y
F065219	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_1000491911	F065219	GGAG	MHYELTQDGNTGNWWVWRCHEDGYREIVQTLSADLNVTEAHRYMDAWIEAHG
Ga0213858_1000491914	F060355	AGGAG	MTLKDNILELWEKGWTIYDIAEVYNCRAEDVLRILGLEENPFSYELH
Ga0213858_100049193	F020356	AGGA	MTTPNYTAEMVALLEQNAPIDFAKAQSLATEMDRSVKSIIAKCKREGIEYISKPAPAKKKSAPTKADLVSAICKAVDLDSCDGLEKATGLALSNLLMAIK