Scaffold Ga0213858

Basic Information
Taxon OID	3300021356 Open in IMG/M
Scaffold ID	Ga0213858_10003042 Open in IMG/M
Source Dataset Name	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021356 Open in IMG/M

Scaffold ID

Ga0213858_10003042 Open in IMG/M

Source Dataset Name

Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7930
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (86.67%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7930

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (86.67%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	34.7181	Long. (^o)	-76.6707	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

34.7181

Long. (^o)

-76.6707

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010614	Metagenome	301	Y
F013407	Metagenome	271	N
F033412	Metagenome	177	N
F055697	Metagenome	138	N
F058112	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_100030421	F033412	GAG	MTAEIDAEFWRVLLAAWGCFALGAAIWHYRKDLQGYGLQPVGRLLLAISPALLSAFGYHSTQAVRTVELMAQSVPVRHVGNEIEPVIADRDTVTTQGGVRVEYIRTNYGPERRGAGSVRVGDEYTGRRSGSGGRGLASVGPSVAGPVPVPIWRP
Ga0213858_1000304212	F010614	AGGTGG	MNDDETRKQWAKLCRMYITRGNAAIDQIVSELHAMAGIREGFESADAWEAMHDRAVQDMEAQAPNTPEYAWALLRVLGVKLWMVRALEAMEEGADG
Ga0213858_1000304213	F058112	GGGGG	MTPAQRQQLASAQAAAQARNREAFRDNPNLQIWLRQVRAAAVIRRTARNFGRWKHE
Ga0213858_100030423	F055697	AGGCGG	MRTAAAVFVFCTVLHCPVPDQWKFTIAEPPAAAQPDWYLVTFGASWCGPCQQWKRDHLAATRKVLPVVVVDITKDPEWKRSRQLAAPPGGRATIPGITRVPTFWLVHRASRWPVKTWVGGRTAEQVRRLIPDTVPDWTRETEAAPPLPE
Ga0213858_100030426	F013407	AGG	MSGPITKHHWDALAADIYARNGYRNYGIDPMSILAMLNTIVPQVLRWVADCKRLRDDEVQPAVAAMHARNPGQATRRTAAQCKKLRRKQGEKFCKDFSVPRTKRRAILQADFTLDDEQATAMAEDMIAECCNRSAEDVARYAAAARGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0213858_10003042

Overview

Ecosystem & Geography

Associated Families

Sequences