NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213858_10002952

Scaffold Ga0213858_10002952


Overview

Basic Information
Taxon OID3300021356 Open in IMG/M
Scaffold IDGa0213858_10002952 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8043
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016292Metagenome248Y
F066702Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0213858_1000295215F016292N/AMTNHPKILGDCYKKFNLAHTSKSQNTIPDDIRFRNYIVLTPKEKANLPSNCSFTGGTIAHEIIQKILCKNLTYEQALDSVQEKINNYKSIDEKDDIKFGHIIDNMESLVNNHLENIAEVGKQTWKDELEYTHWANGISTYFLMYVDLVGQTEFFDIKNVFGTLTKTKKGFSYSKRKCPQVPYHSDCMQVALYSKELPKLKPCLTYASDSDRVVFTPSNCVELRPESLQYYYEELVLYQKCWEQKLKLADGDTKVLALLCKPDLSEIRKDGFWWKGLDPDIIKRFRSYYEL
Ga0213858_1000295217F066702N/AMILKEIKYRNFKVKIVKLARKDAKKDNIWGYYDTDKSIIAIQEDIKNITLLDTLLHEIAHMIAHKSEIRLKNLGEEGVASFIGSEFSKVFLQNPKLVTLIKRCIAK
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