Scaffold Ga0213858_10002853

Overview

Basic Information

• Taxon OID: 3300021356
• Scaffold ID: Ga0213858_10002853
• Source Dataset Name: Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8187
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 34.7181
  • Long. (^o): -76.6707
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024111	Metagenome / Metatranscriptome	207	Y
F027835	Metagenome / Metatranscriptome	193	N
F048249	Metagenome	148	N
F055727	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0213858_100028531	F048249	N/A	MKTSIFNTRIIRKGSQVLYRGSWGRDAQKIAEVIAIEQTQGPNEKYGDEVDAVSLDDNYVLTLNNGHWCYSYQVDGLVQLPENQSVAK
Ga0213858_100028533	F027835	GAG	MKTQQHIDALYERRKTAGGFESALIDAYMKADGGNAKLLEDAFKGTRFDLTPKPKYNHGVNVLRNAAYWSGERDEYLNDNKTAYQIIDEYLQEREALDKIVNG
Ga0213858_100028536	F055727	N/A	MMYNHFLDFSVDEMVDAYTYFTLIRDYEGCRLVGEAFAQNTSIDFQNF
Ga0213858_100028537	F024111	N/A	MSQPIFAFVFPFGEHGGEFRCKRNFVDAESAANWAVEIILKEGDDCCYFKEVASADYVFEPACESHTVVCWHDDAPTWEMYDVID