Basic Information | |
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Taxon OID | 3300021356 Open in IMG/M |
Scaffold ID | Ga0213858_10001564 Open in IMG/M |
Source Dataset Name | Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10935 |
Total Scaffold Genes | 34 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 28 (82.35%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED202 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: North Carolina | |||||||
Coordinates | Lat. (o) | 34.7181 | Long. (o) | -76.6707 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017831 | Metagenome / Metatranscriptome | 238 | Y |
F071269 | Metagenome / Metatranscriptome | 122 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0213858_1000156416 | F071269 | AGGAG | MAKKNQYKVDFYQTVYLGSQLIDAEDEHEAKSEAMQMNYKAGLGLKWAEDWEATIDNNHDWIFICTAHSKQECEDDECWEEFEKLEEE |
Ga0213858_100015646 | F017831 | GGAG | MITECMIFLASVLPMGFDESKVINNYLQCNNNVPKSMQQYAEYYVEHFDKENIDTAVRIGWCESRGKQSAYRDDNGDSGVMQFVSWTWNWVAEKYDLPMWNDWVIMKDGRPYTEDKVSRSSIGFQQTKVQFSPYYNIMFASILAEDIYGRTQWRDWSSSEWCWGDEEKWREKWLNE |
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